Peer Reviewed Journals

Hessel V, Nguyen M, Knowling M, Tran NN, Burgess AJ, Fisk ID, Watts M, This HJM, Mortimer J, Gilliham M. Space Farming: Horticulture Systems on Spacecraft and Outlook to Planetary Space Exploration. Plant Physiology and Biochemistry, 194:  708-721

Burgess AJ*, Masclaux-Daubresse C*, Strittmatter G, Weber APM, Taylor S, Harbinson J, Yin X, Long S, Paul MJ, Westhoff P, Loreto F, Ceriotti A, Saltenis VLR, Rodrigues V,  Pribil M, Nacry P, Scharff LB, Jensen PE, Muller B, Cohan JP, Foulkes J, Rogowsky P, Debaeke P, Meyer C, Nelissen H, Inzé D, Klein Lankhorst R, Parry M, Murchie EH, Baekelandt A. Improving crop yield potential: Underlying biological processes and future prospects. Food and Energy Security, e435

Durand M, Stangl Z, Salmon Y, Burgess AJ, Murchie EH, Robson TM. Sunflecks in the upper canopy: dynamics of light-use efficiency in sun and shade leaves of Fagus sylvatica. New Phytologist, 235(4): 1365-1378

Burgess AJ, Correa Cano M, Parkes B. The deployment of intercropping and agroforestry as adaptation to climate change. Crop and Environment, 1(2): 145-160

Murchie EH, Burgess AJ (2022). Casting light on the architecture of crop yield. Crop and Environment, 1(1): 74-85

Hessel V, Liang S, Tran NN, Escribà-Gelonch M, Zeckovic O, Knowling M, Rebrov E, Burgess A, This H, Westra S, Fisk I, Gilliham M. Eustress in Space: Opportunities for Plant Stressors beyond the Earth Ecosystem. Science of the Total Environment, 9: 841211

Gibbs JA, Zazueta C, Mcausland L, Murchie EH, Burgess AJ (2021). A deep learning method for fully automatic stomatal morphometry and maximal conductance estimation. Frontiers in Plant Science, 780180

Scharff LB, Rodrigues Saltenis VL, Jensen PE, Baekelandt A, Burgess AJ, Burow M, Ceriotti A, Cohan J-P, Geu-Flores F, Halkier BA, Haslam RP, Inzé D, Lankhorst RK, Murchie E, Napier JA, Nacry P, Parry MAJ, Santino A, Scarano A, Sparvoli F, Wilhelm R, Pribil M (2021). Prospects to improve the nutritional quality of crops. Food and Energy Security, e327

Burgess AJ*, Durand M, Gibbs JA, Retkute R, Robson TM, Murchie EH (2021). The effect of canopy architecture on the patterning of ‘windflecks’ within a wheat canopy. Plant Cell Environment, 44(11): 3524-3537

Durand M, Matule B, Burgess AJ, Robson TM (2021). Sunfleck properties from time series of fluctuating light. Agriculture Forest Meteorology, 308-309: 108554

Burgess AJ*, Herman T*, Ali A, Murchie EH (2020). Interactions between nitrogen nutrition, canopy architecture and photosynthesis in rice, assessed using high resolution 3D reconstruction. In Silico Plants, diaa017

Foo CC*, Burgess AJ*, Tree-intong P, Retkute R, Ruban AV, Murchie EH (2020). Photoprotective energy dissipation is greater in the lower, not the upper regions of a rice canopy: a 3D analysis. Journal of Experimental Botany, 71(22): 7382–7392

Gibbs JA*, Burgess AJ*, Pound MP, Pridmore TP, Murchie EH (2019). Recovering Wind-induced Plant Motion in Dense Field Environments via Deep Learning and Multiple Object Tracking. Plant Physiology, 181(1): 28-42

Burgess AJ, Gibbs JA, Murchie EH (2018). A canopy conundrum: can wind-induced movement help to increase crop productivity? Journal of Experimental Botany: ery424

Retkute R, Townsend AJ, Murchie EH, Jensen OE, Preston SP (2018). Three-dimensional plant architecture and sunlit–shaded patterns: a stochastic model of light dynamics in canopies. Annals of Botany, 122(2): 291-302

Plumb W, Townsend AJ, …Ruban AV, Foyer CH (2018). Ascorbate-mediated regulation of growth, photoprotection, and photoinhibition in Arabidopsis thaliana. Journal of Experimental Botany, 69(11): 2823-2835

Townsend AJ, Saccon F, Giovagnetti V, Wilson S, Ungerer P, Ruban AV (2018). The causes of altered chlorophyll fluorescence quenching induction in the Arabidopsis mutant lacking all minor antenna complexes. Biochimica et Biophysica Acta (BBA), 1859(9):666-675

Townsend AJ*, Ware MA*, Ruban AV (2017). Dynamic interplay between photodamage and photoprotection in photosystem II. Plant Cell Environment: 13107

Townsend AJ, Retkute R, Preston SP, Jensen OE, Chinnathambi K, Randall J, Carmo-Silva E, Murchie EH (2017). Sub-optimal photoacclimation in wheat is revealed by high resolution 3D canopy reconstruction. Plant Physiology: 17.01213

Burgess AJ, Retkute R, Herman T, Murchie EH (2017). Exploring Relationships between Canopy architecture, light distribution, and photosynthesis in contrasting rice genotypes using 3D canopy reconstruction. Frontiers in Plant Science, 8: 734

Burgess AJ, Retkute R, Pound MP, Mayes S, Murchie EH (2016). Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems. Annals of Botany: mcw242

Burgess AJ, Retkute R, Preston S, Jensen OE, Pound MP, Pridmore TP, Murchie EH (2016). The 4-dimensional plant: Effects of wind-induced canopy movement on light fluctuations and photosynthesis. Frontiers in Plant Science, 7: 1392

Pound MP, Atkinson J, Townsend AJ, et al. (2016). Deep Machine Learning provides state-of-the-art performance in image-based plant Phenotyping. GigaScience, 6: 1-10

Burgess AJ*, Retkute R*, Pound MP, Preston SP, Pridmore TT, Foulkes MJ, Jensen OE, Murchie EH (2015). High-resolution 3D structural data quantifies the impact of photoinhibition on long term carbon gain in wheat canopies in the field. Plant Physiology, 169 (2): 1192-1204

Retkute R, Smith-Unna SE, Smith RW, Burgess AJ, Jensen OE, Johnson GN, Preston SP, Murchie EH (2015). Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light? Journal of Experimental Botany: erv055

News and Views Articles

Burgess AJ, Cardoso AA (2022). Throwing shade: limitations to photosynthesis and yield at high planting densities and how to overcome them. Plant Physiology, kiac567

Burgess AJ, Wang P (2022). Not all Calvin’s are equal: Differential control of the Calvin cycle in C3 versus C4 plants. Plant Physiology, kiac531

Burgess AJ, Majda M (2022). Pieces of the 3D puzzle: identification of genes underlying rice canopy architecturePlant Physiology, kiac474

Burgess AJ (2022). Wine without water: improving grapevine tolerance to drought. Plant Physiology, kiac381

Burgess AJ, Majda M (2022). A future in 3D: Analyzing morphology in all dimensionsPlant Physiology, kiac190


CropBooster-P (2020). Strategy for future plant research in Europe. European Union Horizon 2020 Research

Book Chapters

Murchie EH, Burgess AJ, McAusland L. Abiotic stress and adaptation in carbon fixation. In Ruban AV, Murchie EH, Foyer C (eds.) Photosynthesis in Action, in press

Murchie EH, Townsend AJ, Reynolds M (2018). Crop radiation capture and use efficiency. In Encyclopedia of Sustainability Science and Technology

Lin BB, Burgess AJ and Murchie EH (2015). Adaptation for climate sensitive crops using agroforestry: case studies for coffee and rice. Chapter 11 in Ong C, Black C and Wilson J. 2nd Eds Tree-Crop Interactions: Agroforestry in a Changing Climate, CABI

Contributing author to Karunaratne AS (2015). (eds) Proso Millet (Panicum miliaceum L.)-Agronomy, Botany, Ecophysiology and Nutrition.