Peer Reviewed Journals

Gibbs JA, Burgess AJ, Zazueta C, Mcausland L, Murchie EH. A deep learning method for fully automatic stomatal morphometry and maximal conductance estimation. New Phytologist, under review

Burgess AJ*, Herman T*, Ali A, Murchie EH (2020). Interactions between nitrogen nutrition, canopy architecture and photosynthesis in rice, assessed using high resolution 3D reconstruction. In Silico Plants, diaa017

Foo CC*, Burgess AJ*, Tree-intong P, Retkute R, Ruban AV, Murchie EH (2020). Photoprotective energy dissipation is greater in the lower, not the upper regions of a rice canopy: a 3D analysis. Journal of Experimental Botany, 71(22): 7382–7392

Gibbs JA*, Burgess AJ*, Pound MP, Pridmore TP, Murchie EH (2019). Recovering Wind-induced Plant Motion in Dense Field Environments via Deep Learning and Multiple Object Tracking. Plant Physiology, 181(1): 28-42

Burgess AJ, Gibbs JA, Murchie EH (2018). A canopy conundrum: can wind-induced movement help to increase crop productivity? Journal of Experimental Botany: ery424

Retkute R, Townsend AJ, Murchie EH, Jensen OE, Preston SP (2018). Three-dimensional plant architecture and sunlit–shaded patterns: a stochastic model of light dynamics in canopies. Annals of Botany, 122(2): 291-302

Plumb W, Townsend AJ, …Ruban AV, Foyer CH (2018). Ascorbate-mediated regulation of growth, photoprotection, and photoinhibition in Arabidopsis thaliana. Journal of Experimental Botany, 69(11): 2823-2835

Townsend AJ, Saccon F, Giovagnetti V, Wilson S, Ungerer P, Ruban AV (2018). The causes of altered chlorophyll fluorescence quenching induction in the Arabidopsis mutant lacking all minor antenna complexes. Biochimica et Biophysica Acta (BBA), 1859(9):666-675

Townsend AJ*, Ware MA*, Ruban AV (2017). Dynamic interplay between photodamage and photoprotection in photosystem II. Plant Cell Environment: 13107

Townsend AJ, Retkute R, Preston SP, Jensen OE, Chinnathambi K, Randall J, Carmo-Silva E, Murchie EH (2017). Sub-optimal photoacclimation in wheat is revealed by high resolution 3D canopy reconstruction. Plant Physiology: 17.01213

Burgess AJ, Retkute R, Herman T, Murchie EH (2017). Exploring Relationships between Canopy architecture, light distribution, and photosynthesis in contrasting rice genotypes using 3D canopy reconstruction. Frontiers in Plant Science, 8: 734

Burgess AJ, Retkute R, Pound MP, Mayes S, Murchie EH (2016). Image-based 3D canopy reconstruction to determine potential productivity in complex multi-species crop systems. Annals of Botany: mcw242

Burgess AJ, Retkute R, Preston S, Jensen OE, Pound MP, Pridmore TP, Murchie EH (2016). The 4-dimensional plant: Effects of wind-induced canopy movement on light fluctuations and photosynthesis. Frontiers in Plant Science, 7: 1392

Pound MP, Atkinson J, Townsend AJ, et al. (2016) Deep Machine Learning provides state-of-the-art performance in image-based plant Phenotyping. GigaScience, 6: 1-10

Burgess AJ*, Retkute R*, Pound MP, Preston SP, Pridmore TT, Foulkes MJ, Jensen OE, Murchie EH (2015). High-resolution 3D structural data quantifies the impact of photoinhibition on long term carbon gain in wheat canopies in the field. Plant Physiology, 169 (2): 1192-1204

Retkute R, Smith-Unna SE, Smith RW, Burgess AJ, Jensen OE, Johnson GN, Preston SP, Murchie EH (2015). Exploiting heterogeneous environments: does photosynthetic acclimation optimize carbon gain in fluctuating light? Journal of Experimental Botany: erv055


CropBooster-P (2020). Strategy for future plant research in Europe. European Union Horizon 2020 Research

Book Chapters

Murchie EH, Townsend AJ, Reynolds M (2018) Crop radiation capture and use efficiency. In Encyclopedia of Sustainability Science and Technology

Lin BB, Burgess AJ and Murchie EH (2015) Adaptation for climate sensitive crops using agroforestry: case studies for coffee and rice. Chapter 11 in Ong C, Black C and Wilson J. 2nd Eds Tree-Crop Interactions: Agroforestry in a Changing Climate, CABI

Contributing author to Karunaratne, A.S. (2015) (eds) Proso Millet (Panicum miliaceum L.)-Agronomy, Botany, Ecophysiology and Nutrition.